Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs16920343 | chr9:4006296 | C/T | 7.84E-7 | 192 | 2.97 | 11.63 | 13.85 | KM Plot |
| LIHC | rs16929939 | chr10:74262353 | G/T | 8.65E-5 | 192 | 3.23 | 3.03 | 14 | KM Plot |
| LIHC | rs16930331 | chr12:26358891 | A/G | 0.000321 | 192 | 2.9 | 12.42 | 13.87 | KM Plot |
| LIHC | rs16941703 | chr12:112318734 | C/T | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs16941759 | chr12:112367921 | A/G | 6.8E-6 | 192 | 4.03 | 14.8 | 13.03 | KM Plot |
| LIHC | rs17055717 | chr6:128649576 | C/T | 0.000336 | 192 | 2.23 | 19.62 | 12.43 | KM Plot |
| LIHC | rs17058358 | chr18:73546922 | C/T | 1.17E-9 | 192 | 13.35 | 13.97 | 0.63 | KM Plot |
| LIHC | rs17059287 | chr13:61619196 | A/C | 9.6E-5 | 192 | 4.35 | 14.5 | 13.15 | KM Plot |
| LIHC | rs17063972 | chr6:135011701 | C/T | 2.24E-9 | 192 | 0.63 | 16.63 | 12.9 | KM Plot |
| LIHC | rs17078209 | chr8:6672274 | A/G | 4.61E-10 | 192 | 13.13 | 16.7 | 0.63 | KM Plot |
| LIHC | rs170917 | chr21:44418321 | A/G | 6.15E-6 | 191 | 2.7 | 13.85 | 13.65 | KM Plot |
| LIHC | rs17097827 | chr14:99280648 | A/G | 0.000301 | 192 | 3.23 | 14.55 | 12.9 | KM Plot |
| LIHC | rs17125954 | chr8:17792715 | A/G | 2.35E-9 | 192 | 12.87 | 19.63 | 0.63 | KM Plot |
| LIHC | rs17133015 | chr7:127108868 | A/G | 0.000183 | 192 | 13.87 | 11.97 | 6.13 | KM Plot |
| LIHC | rs17135338 | chr16:1498572 | A/G | 2.45E-5 | 192 | 13.13 | 19.63 | 1.87 | KM Plot |